QuickNII: Software for 2D image registration to 3D atlas

QuickNII documentation

• What is QuickNII?
  • Which atlases are supported?
  • What is the output of QuickNII?
• Installation
  • System requirements
  • Conditions of use
  • Download
• Acknowledgements
• Contact us
• FAQ

Operations

• 1. Image preprocessing requirements
  • 1.1. Input data
  • 1.2. File naming convention
  • 1.3. Generate a XML descriptor file
• 2. Start the anchoring
• 3. Landmarks
• 4. Determine the sectioning angles
• 5. Final adjustments of in plane position
• 6. Saving results and validation
• 7. Coordinates
• 8. Export of atlas maps for the QUINT workflow
• 9. Export of atlas maps contours for overlaying with your images
• 10. Related publications