2. Landmarks

By clicking the roll-down bar in the top left corner, MRI, DTI (for WHS atlas only) or atlas templates can be chosen. It is useful to use these different atlases actively as they give different information that can be used when anchoring. Detailed description of the UI can be found at: https://www.nitrc.org/plugins/mwiki/index.php?title=quicknii:Basic_operation


It is easiest to establish the anteroposterior position of sections that containing key anatomical landmarks. Some examples are shown below:


Genu of the corpus callosum


Decussation of the anterior commissure


Optic tract in red, mid-level of the anterior hippocampus